COVID-19 updates: Elizabeth Warren tests positive

The Centers for Disease Control and Prevention has signed off on its advisory committee's recommendation that people who have a choice should get an mRNA vaccine, either Pfizer or Moderna, over the single-shot Johnson & Johnson vaccine.

The updated recommendation comes after a review of new CDC data on rare blood clots linked to the J&J vaccine.

"Today's updated recommendation emphasizes CDC's commitment to provide real-time scientific information to the American public," CDC Director Dr. Rochelle Walensky said in a statement. "I continue to encourage all Americans to get vaccinated and boosted."

The new omicron variant makes up nearly 100% of the strains found in wastewater samples in Orlando, Florida, officials said Thursday.

"It escalated rapidly," Orange County Utilities spokeswoman Sarah Lux told ABC News.

In its first test for the variant last Thursday, the department found no evidence of omicron in the community's wastewater, she said. On Saturday, it represented about 30% of the strains found in the samples, and by Tuesday, nearly 100%.

"So, we're talking about zero to nearly 100 in a matter of a week," Lux said.

All parts of the county are seeing an increasing presence of the omicron variant, she said. The southern area, home to the theme parks, has seen the highest amount of virus remnants, followed by the eastern area, which is home to the University of Central Florida.

-ABC News' Arielle Mitropoulos

The CDC's advisory committee recommended Thursday that people who have a choice should get an mRNA vaccine, either Pfizer or Moderna, over the single-shot Johnson & Johnson vaccine after a review of new CDC data on rare blood clots linked to J&J.

The vote was unanimous.

The rare blood clots are not a new safety concern and the vaccine has already become far less common in the U.S. after it was given an FDA warning label about the clotting condition. But more data that confirmed a slightly higher rate of clotting cases and deaths than was previously reported caused the CDC and FDA to take another look at the data this week.

The CDC has confirmed nine deaths and 54 cases from the severe clotting event, thrombosis with thrombocytopenia.

There could also be more cases and deaths because TSS is under-diagnosed and could be underreported, the CDC said.

The clotting is more common among women in their 30s and 40s but has been seen in adult men and women of all ages.

The experts said J&J should not be taken off the shelves and is still far more beneficial than not getting any vaccine at all.

-ABC News' Cheyenne Haslett

Maine and New Hampshire are now averaging more new cases than at any other point in the pandemic, while daily cases in Massachusetts, Vermont, Connecticut, Pennsylvania and Rhode Island are nearing peak levels, according to federal data.

Five of those states -- Connecticut, Maine, Massachusetts, Rhode Island and Vermont -- have the highest full vaccination rates in the country. 

In Florida, which has been largely spared from the latest COVID-19 wave, daily cases have increased by 92% over the last two weeks, according to federal data.

-ABC News' Arielle Mitropoulos