Virginia Tech said it has cleared an encampment on campus and arrested 82 protesters for trespassing, after refusing to comply with university policies.

"Virginia Tech strongly supports free speech, even when the content of that speech may be disagreeable to some. However, those rights do not extend beyond the point where they interfere with the rights of others, violate our policies, the Code of Virginia, or federal laws and/or create a threat to safety for others," Virginia Tech President Tim Sands said in a statement.

Meanwhile, Virginia Tech Muslim Student Association said in a letter the 91 students faculty and staff were arrested for peacefully protesting.

"As we reach the end of the semester, 7 months after Oct. 7, we are finding our voices still unheard. We are waiting for your support of us and Palestine," the Virginia Tech MSA said in a statement.

-ABC News' Nadine El-Bawab and Kerem Inal

California State Polytechnic University, Humboldt said it has cleared two campus buildings that had been occupied by protesters for over a week and arrested 25 people.

"Those arrested faced a range of different charges depending on individual circumstances including unlawful assembly, vandalism, conspiracy, assault of police officers, and others. In addition, students could face discipline for conduct violations while any University employees arrested could face disciplinary action," Cal Poly said in a statement.

The university called the occupation of the two buildings "criminal activity" and said there were "serious concerns it would spread even further on campus."

"This morning’s enforcement action was determined to be necessary to restore order and to address the lawlessness and dangerous conditions that had developed. What was occurring was not free expression or a protest," the university said in a statement.

The campus will remain closed until May 10.

Northwestern University announced it has reached a deal with pro-Palestinian protesters, ending an encampment of students and faculty, but allowing peaceful demonstrations to continue through June 1.

The university said it would "answer questions from any internal stakeholder about holdings, held currently or within the last quarter, to the best of its knowledge and to the extent legally possible" -- meeting a key call from divestment protesters and students around the country who are seeking more transparency over universities' investments.

Northwestern will also reestablish an Advisory Committee on Investment Responsibility in the fall, which will include representatives from students, faculty and staff.

The university also pledged more inclusivity, funding two Palestinian faculty members and the full cost of attendance for five Palestinian undergraduate students annually, as well as a commitment to raising funds to sustain the program beyond this commitment.

Under the agreement, Northwestern says tents will be removed immediately but one aid tent will be allowed to remain. Protesters will need to suspend the use of "non-approved" amplified sound." Protesters who refuse to follow the agreement will be suspended and non-affiliated individuals must leave campus.

The University of Connecticut cleared an encampment of pro-Palestinian protesters early Tuesday after they refused orders to disperse. UConn has not yet revealed the number of arrests and charges.

UConn said that protests were permitted but setting up tents violated university guidelines.

"The group was warned multiple times over a period of days that while they were free to be in the space and exercise their free speech rights, the guidelines needed to be followed and the tents needed to be taken down. This was ignored," UConn said in a statement.

"UConn Police directed them four times on Tuesday morning to remove the tents and disperse, and they again repeatedly ignored the directives. Officers then entered the site to remove the tents and tarps, and to arrest those who refused compliance," UConn said in a statement.

-ABC News' Mark Osborne

In a letter authorizing the NYPD to enter the Columbia University campus and break up the protest, the school detailed the backstory on its recent talks with those in the encampments and the takeover Tuesday night of Hamilton Hall.

According to the letter, from Columbia President Minouche Shafik, an individual "hid in the building" at Hamilton Hall until it was closed and let others in. The group's purpose was "occupying the building," the letter read.

Two security guards were inside the building at the time, and the university said in the letter to the NYPD they were able to "secure their release."

"We believe that while the group who broke into the building includes students, it is led by individuals who are not affiliated with the University," the letter read. "The individuals who have occupied Hamilton Hall have vandalized University property and are trespassing."
Addressing the encampment on the school's Morningside campus, the university told police discussions had been carried out with group representatives, but on Sunday, they "reached an impasse."

At that time, the university says it told the group they did not have permission to "occupy spaces on campus" and were "in violation" of school rules and policies.
On Monday morning, the protesters were told they would be suspended if they didn't disperse by Monday at 2 p.m. ET.

The university said in its Tuesday night NYPD letter that those in the encampment were "suspended" and "not authorized to be on University property and are trespassing."

The university said it believed the actions of those in the protest were escalating. "These activities have become a magnet for protesters outside our gates which creates significant risk to our campus and disrupts the ability of the University to continue normal operations," the letter read.

Columbia's president concluded the letter by asking the NYPD to "help to clear all individuals from Hamilton Hall and all campus encampments."

She further asked police to have a campus presence through May 17 -- graduation is May 15 -- "to maintain order and ensure encampments are not reestablished."

Police moved onto the Columbia University campus a little before 9 p.m. ET and began making arrests.

The NYPD also used a vehicle with an extendable roof ramp to help officers breach Hamilton Hall from an upper floor. From there, the police cleared the building.

The campus encampment and hall were cleared before 11:30 p.m.

-ABC News' Jolie Lash, Aaron Katersky and Joshua Hoyos