Special prosecutor Tom Windom approached the bench and requested a speedy trial.
"This case will benefit from normal order including a speedy trial," Windom said.
But the defense said it needs ample opportunity to review a massive amount of evidence to be entered by the government.
Defense attorney John Lauro told the judge they need an "understanding" from the government about the "magnitude of discovery," including electronic data and documents.
The judge responded to Windom by saying the court would ensure a "fair trial" without elaborating.
"There will be a fair process and a fair trial in this court," the judge said. "I am certain of that."
Still, Lauro continued to raise issues, saying of special counsel Jack Smith: "They've had 3 1/2 years to investigate this matter, and also there's a number of agents and lawyers that are assisting the government in this proceeding, and all we would ask is the opportunity to fairly defend our client, but in order to do that we're going to need a little time."
The judge told Lauro to raise any concerns with the district judge overseeing the trial.
-ABC News' Soorin Kim and Mike Levine